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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
36
DNase-seq
21
total RNA-seq
8
ATAC-seq
1
GRO-seq
Assay category
88
DNA binding
44
DNA accessibility
21
Transcription
Target of assay
61
histone
61
histone modification
38
broad histone mark
24
control
23
narrow histone mark
3
transcription factor
Date released
69
October, 2019
32
June, 2019
13
December, 2017
13
February, 2018
8
August, 2021
7
May, 2019
6
February, 2021
July, 2019
3
February, 2020
2
May, 2021
1
January, 2018
Available data
149
bam
119
bigWig
106
bed narrowPeak
84
bigBed narrowPeak
39
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
27
fastq
21
tsv
Organism
154
Homo sapiens
Biosample type
117
tissue
29
in vitro differentiated cells
8
cell line
Organ
901
pancreas
781
liver
664
connective tissue
479
adipose tissue
478
epithelium
368
heart
343
kidney
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
154
AMP
Genome assembly (visualization)
125
hg19
124
GRCh38
1
hg18
Lab
154
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
April, 2018
July, 2019
BIOSAMPLE
ASSAY
154 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
GRO-seq
tissue
tibial nerve
35
2
5
1
tibial artery
23
2
1
1
muscle of leg
7
13
muscle of arm
17
distal epiphysis of femur
1
+ See 9 more…
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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