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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ATAC-seq
8
ChIP-seq
4
DNase-seq
4
total RNA-seq
2
single cell RNA-seq
Assay category
41
DNA accessibility
8
DNA binding
6
Transcription
Target of assay
histone
20
histone modification
14
broad histone mark
7
control
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
February, 2021
35
February, 2023
8
October, 2019
3
July, 2019
3
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
42
bed narrowPeak
16
bam
9
bigWig
6
tsv
5
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
55
Homo sapiens
Biosample type
53
tissue
2
primary cell
Organ
763
pancreas
686
liver
399
epithelium
311
kidney
215
heart
151
connective tissue
99
brain
99
vasculature
94
blood vessel
73
adipose tissue
68
blood
68
bodily fluid
67
limb
63
musculature of body
58
eye
55
artery
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
9
bone element
8
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
55
AMP
Genome assembly (visualization)
44
GRCh38
9
hg19
Lab
55
AMP-T2D consortium
month_released!
April, 2019
February, 2021
organ_slims!
large intestine
target.investigated_as!
histone
BIOSAMPLE
ASSAY
55 results
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ATAC-seq
ChIP-seq
DNase-seq
total RNA-seq
single cell RNA-seq
tissue
coronary artery
36
3
2
1
tibial artery
1
5
2
1
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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