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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 93single cell RNA-seq
  • 77ChIP-seq
  • 72total RNA-seq
  • 47ATAC-seq
  • 30DNase-seq
  • 8WGBS
  • 3Hi-C
  • 3pCHi-C
  • 2RRBS
  • 1small RNA-seq
Assay category
  • 166Transcription
  • 77DNA accessibility
  • 77DNA binding
  • 10DNA methylation
  • 33D chromatin structure
Target of assay
  • 55histone
  • 55histone modification
  • 30broad histone mark
  • 25narrow histone mark
  • 12transcription factor
  • 10control
  • 8RNA binding protein
Date released
  • 92August, 2021
  • 66February, 2021
  • April, 2019
  • 40May, 2024
  • 36February, 2023
  • 35June, 2019
  • 25July, 2019
  • 21May, 2019
  • 8October, 2019
  • 7March, 2020
  • 3February, 2020
  • 3May, 2021
Available data
  • 177bigWig
  • 168tsv
  • 155bam
  • 144bed narrowPeak
  • 48bigBed narrowPeak
  • 30bed bed3+
  • 30bed broadPeak
  • 30bigBed broadPeak
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 6tagAlign
  • 3bedpe bed3+
  • 3hic
Organism
  • 336Homo sapiens
Biosample type
  • 256tissue
  • 66cell line
  • 13primary cell
  • 1in vitro differentiated cells
Organ
  • 946pancreas
  • 791liver
  • 684connective tissue
  • 524epithelium
  • 491adipose tissue
  • 336heart
  • 331kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 336AMP
Genome assembly (visualization)
  • 220GRCh38
  • 141hg19
Lab
  • 296AMP-T2D consortium
  • 40Patrick T. Ellinor, Broad
Audit category:
  • 6inconsistent ontology term
month_released!
  • April, 2019
BIOSAMPLE
ASSAY

336 results

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Clear Filters
single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
left cardiac atrium18401
coronary artery51362
heart left ventricle183234111
heart15418111
right cardiac atrium18611
cell line
smooth muscle cell of the coronary artery6528
primary cell
cardiac fibroblast531
cardiac atrium fibroblast1
cardiac ventricle fibroblast1
endothelial cell of coronary artery1
smooth muscle cell of the coronary artery1
in vitro differentiated cells
cardiac fibroblast1
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