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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
total RNA-seq
57
ATAC-seq
38
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
62
Transcription
61
DNA accessibility
38
DNA binding
Target of assay
24
histone
24
histone modification
14
broad histone mark
10
narrow histone mark
9
control
5
transcription factor
1
RNA binding protein
Date released
74
February, 2021
43
February, 2023
30
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
March, 2020
Available data
110
bam
85
bigWig
82
bed narrowPeak
59
tsv
25
bigBed narrowPeak
6
tagAlign
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
txt
Organism
162
Homo sapiens
Biosample type
94
tissue
66
cell line
2
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
162
AMP
Genome assembly (visualization)
136
GRCh38
105
hg19
Lab
162
AMP-T2D consortium
month_released!
April, 2020
BIOSAMPLE
ASSAY
162 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
pCHi-C
tissue
coronary artery
1
36
5
2
tibial artery
1
1
23
2
islet of Langerhans
4
acetabular part of hip bone
1
1
ilium
1
1
+ See 12 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
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