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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
Assay category
31
DNA binding
Target of assay
806
histone
806
histone modification
439
transcription factor
424
narrow histone mark
382
broad histone mark
286
control
104
RNA binding protein
89
recombinant protein
31
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
15
November, 2017
7
November, 2018
6
January, 2019
August, 2017
3
December, 2017
December, 2018
Available data
31
bam
31
bed narrowPeak
31
bigBed narrowPeak
31
bigWig
31
fastq
4
bed broadPeak
4
bigBed broadPeak
Organism
31
Homo sapiens
Biosample type
28
cell line
2
tissue
1
in vitro differentiated cells
Organ
23
liver
8
blood
8
bodily fluid
1
epithelium
Project
31
AMP
Genome assembly (visualization)
31
hg19
29
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
2
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
11
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2017
December, 2018
October, 2017
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
cell line
HepG2
20
GM12878
8
tissue
liver
2
in vitro differentiated cells
hepatocyte
1
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