Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
83
ChIP-seq
69
total RNA-seq
38
DNase-seq
14
ATAC-seq
6
Hi-C
1
FAIRE-seq
1
WGBS
1
pCHi-C
Assay category
83
DNA binding
69
Transcription
53
DNA accessibility
6
3D chromatin structure
1
DNA methylation
Target of assay
64
histone
64
histone modification
43
broad histone mark
21
narrow histone mark
19
control
Date released
150
February, 2021
90
October, 2019
32
June, 2019
8
February, 2023
7
May, 2019
5
July, 2019
3
February, 2020
1
March, 2020
1
May, 2021
Available data
194
bam
164
bigWig
107
bed narrowPeak
97
bigBed narrowPeak
88
txt
65
tsv
40
bed broadPeak
40
bigBed broadPeak
38
bed bed3+
4
bed bed3
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
297
Homo sapiens
Biosample type
274
tissue
23
primary cell
Organ
758
pancreas
737
liver
559
connective tissue
495
epithelium
434
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
70
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
24
embryo
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
296
AMP
1
T1D
Genome assembly (visualization)
177
hg19
168
GRCh38
Lab
296
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
1
audit script error
month_released!
August, 2017
February, 2018
BIOSAMPLE
ASSAY
297 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
FAIRE-seq
WGBS
pCHi-C
tissue
bone element
84
bone tissue
58
tibial nerve
35
5
2
1
tibial artery
23
1
2
1
muscle of leg
7
13
1
+ See 17 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
megakaryocyte
1
See all biosamples
Download