Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
73
candidate regulatory elements
45
target gene predictions
35
chromatin state
11
accessible chromatin
6
binding sites
5
histone modifications
3
eQTL
3
gene expression
Date released
104
September, 2022
49
February, 2021
8
June, 2020
6
May, 2021
6
November, 2021
August, 2017
February, 2024
3
January, 2022
3
March, 2024
1
March, 2020
1
October, 2022
Available data
140
bed bed3+
35
bed bed9
3
bigWig
3
tsv
Organism
181
Homo sapiens
Biosample type
143
tissue
32
cell line
6
primary cell
Organ
870
epithelium
651
kidney
459
brain
435
connective tissue
357
musculature of body
309
lung
279
intestine
250
heart
249
pancreas
248
vasculature
244
limb
202
skin of body
188
blood vessel
188
bodily fluid
177
blood
168
large intestine
163
embryo
146
extraembryonic component
124
liver
116
stomach
108
eye
89
bone element
85
adipose tissue
85
mammary gland
83
small intestine
77
prostate gland
75
artery
73
placenta
72
adrenal gland
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
43
esophagus
43
spinal cord
34
spleen
32
uterus
testis
25
nerve
23
lymphoid tissue
23
ovary
22
thyroid gland
22
vein
21
lymphatic vessel
19
mouth
18
skeleton
15
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
175
AMP
6
ENCODE
Genome assembly (visualization)
175
hg19
44
GRCh38
month_released!
August, 2017
February, 2024
organ_slims!
testis
BIOSAMPLE
TYPE
181 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
binding sites
histone modifications
eQTL
gene expression
tissue
large intestine
26
14
13
1
1
sigmoid colon
10
7
5
1
transverse colon
8
5
4
1
1
breast epithelium
5
3
2
1
colonic mucosa
4
2
2
1
+ See 10 more…
cell line
HT-29
2
2
1
1
1
1
SW480
2
1
1
1
1
1
HCT-116 cell
1
1
2
HCT116
2
1
1
RKO
1
1
1
1
+ See 3 more…
primary cell
colon epithelial cell
3
3
See all biosamples
Download