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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ChIP-seq
6
Hi-C
6
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
RRBS
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
9
Transcription
7
DNA binding
6
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
1
control
Date released
June, 2019
August, 2017
10
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
14
bam
14
bigWig
9
tsv
6
bed narrowPeak
6
bigBed narrowPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3+
1
txt
Organism
27
Homo sapiens
Biosample type
24
tissue
3
primary cell
Organ
747
pancreas
677
liver
536
connective tissue
469
epithelium
428
adipose tissue
348
heart
271
kidney
253
brain
224
vasculature
221
blood vessel
159
bone element
138
artery
90
limb
59
blood
59
bodily fluid
54
eye
43
nerve
37
embryo
27
musculature of body
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
27
AMP
Genome assembly (visualization)
17
hg19
12
GRCh38
Lab
27
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
August, 2017
June, 2019
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
RRBS
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
skeletal muscle tissue
1
1
1
1
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
1
1
skeletal muscle cell
1
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