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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
23
ChIP-seq
5
ATAC-seq
3
small RNA-seq
2
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
23
DNA binding
7
DNA accessibility
Target of assay
18
control
5
RNA binding protein
5
transcription factor
Date released
386
February, 2021
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
425
bam
408
bigWig
400
tsv
26
fastq
10
bed narrowPeak
8
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
432
Homo sapiens
Biosample type
430
tissue
2
primary cell
1
in vitro differentiated cells
Organ
744
pancreas
734
liver
557
connective tissue
489
epithelium
433
adipose tissue
386
heart
352
kidney
284
brain
232
vasculature
226
blood vessel
159
bone element
141
artery
122
limb
blood
69
bodily fluid
65
musculature of body
61
eye
43
nerve
37
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
spinal cord
1
thymus
Project
433
AMP
Genome assembly (visualization)
411
hg19
408
GRCh38
Lab
433
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
August, 2017
March, 2020
organ_slims!
blood
spinal cord
BIOSAMPLE
ASSAY
433 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
1
2
visceral abdominal adipose tissue
3
adipose tissue(adipose white tissue)
1
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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