Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
255
gene expression
237
candidate regulatory elements
221
accessible chromatin
202
target gene predictions
124
chromatin state
92
differential activity
43
binding sites
41
variant allelic effects
33
histone modifications
4
eQTL
1
caQTL
Date released
373
September, 2022
269
February, 2021
155
September, 2023
127
November, 2021
77
February, 2024
38
March, 2023
38
May, 2021
33
June, 2020
23
August, 2021
20
January, 2021
15
May, 2020
15
November, 2022
14
January, 2020
12
February, 2023
October, 2022
9
February, 2020
8
April, 2020
7
March, 2020
6
August, 2018
5
October, 2019
August, 2017
4
March, 2024
2
May, 2022
1
January, 2022
1
July, 2020
1
November, 2019
Available data
774
bed bed3+
326
tsv
177
bigWig
124
bed bed9
78
txt
14
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
xls
2
bigBed bed9
Organism
1253
Homo sapiens
Biosample type
824
primary cell
260
tissue
143
cell line
26
in vitro differentiated cells
Organ
940
epithelium
650
kidney
454
brain
441
connective tissue
369
musculature of body
306
lung
284
intestine
274
pancreas
261
vasculature
255
heart
244
limb
213
embryo
201
blood vessel
199
skin of body
197
bodily fluid
186
blood
170
large intestine
152
liver
145
extraembryonic component
118
stomach
107
eye
88
bone element
87
adipose tissue
83
mammary gland
83
small intestine
82
uterus
78
prostate gland
74
artery
73
adrenal gland
72
placenta
64
ureter
62
penis
60
lymph node
49
gonad
49
thymus
45
esophagus
42
spinal cord
34
spleen
25
nerve
25
testis
24
lymphoid tissue
23
ovary
23
thyroid gland
21
lymphatic vessel
21
vein
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
941
AMP
155
KPMP
127
ENCODE
20
T1D
8
LungMap
2
community
Genome assembly (visualization)
901
hg19
310
GRCh38
month_released!
August, 2017
October, 2022
BIOSAMPLE
TYPE
1253 results
search-icon
table-tab-icon
Clear Filters
gene expression
candidate regulatory elements
accessible chromatin
target gene predictions
chromatin state
differential activity
binding sites
variant allelic effects
histone modifications
eQTL
caQTL
primary cell
endothelial cell
9
15
7
2
2
1
1
1
hepatocyte
13
1
8
3
1
1
2
4
epithelial cell of proximal tubule
16
2
1
1
1
1
glomerular endothelial cell
14
2
2
1
1
1
foreskin keratinocyte
11
4
4
+ See 148 more…
tissue
lung
1
33
17
16
1
left lung
26
13
13
right lung
22
1
11
11
pigmented layer of retina
20
upper lobe of left lung
7
1
3
3
1
1
+ See 22 more…
cell line
A549
21
1
19
18
1
1
EndoC_BH1
8
8
1
3
1
IMR-90
2
1
2
1
1
1
PC-9
2
1
2
1
1
1
WI38
5
1
1
+ See 15 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hepatocyte
2
1
1
foreskin keratinocyte
1
1
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
+ See 4 more…
See all biosamples
Download