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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 474total RNA-seq
  • 36ChIP-seq
  • 24ATAC-seq
  • 8DNase-seq
  • 5pCHi-C
  • 4single cell RNA-seq
  • 3small RNA-seq
  • 2Capture-C
  • 1Hi-C
  • 1RNA microarray
  • 1RRBS
Assay category
  • 481Transcription
  • 36DNA binding
  • 32DNA accessibility
  • 13D chromatin structure
  • 1DNA methylation
Target of assay
  • 21control
  • 9histone
  • 9histone modification
  • 6RNA binding protein
  • 6transcription factor
  • 5narrow histone mark
  • 4broad histone mark
Date released
  • 455February, 2021
  • August, 2017
  • 23October, 2018
  • 18July, 2019
  • 18June, 2019
  • 14February, 2023
  • 6November, 2020
  • 5August, 2021
  • 4October, 2019
  • 2April, 2018
  • 2February, 2020
  • 2July, 2018
  • 2March, 2020
  • 2May, 2021
  • 1August, 2018
  • 1January, 2018
  • 1May, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
Available data
  • 522bam
  • 505bigWig
  • 478tsv
  • 29bed narrowPeak
  • 29fastq
  • 25bigBed narrowPeak
  • 16bed bed3+
  • 8bed broadPeak
  • 8bigBed broadPeak
  • 6bed bed3
  • 4bed bedgraph
  • 1bed bedMethyl
  • 1bedpe bed3+
  • 1bigBed bedMethyl
  • 1hdf5
Organism
  • 558Homo sapiens
Biosample type
  • 490tissue
  • 39primary cell
  • 29in vitro differentiated cells
  • 1stem cell
Organ
  • 758pancreas
  • 737liver
  • 559connective tissue
  • 495epithelium
  • 434adipose tissue
  • 393heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 70musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 558AMP
  • 1T1D
Genome assembly (visualization)
  • 525hg19
  • 501GRCh38
Lab
  • 554AMP-T2D consortium
  • 4Struan F.A. Grant, CHOP
  • 1Kyle Gaulton, UCSD
Audit category:
  • 19inconsistent ontology term
month_released!
  • August, 2017
BIOSAMPLE
ASSAY

559 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
single cell RNA-seq
small RNA-seq
Capture-C
Hi-C
RNA microarray
RRBS
tissue
adipose tissue38231
bone tissue58
subcutaneous adipose tissue71211
omental fat pad511121
visceral abdominal adipose tissue3
primary cell
cardiac fibroblast531
osteoblast5211
mesenchymal stem cell7
pancreatic stellate cell4
brain pericyte11
in vitro differentiated cells
adipocyte581
chondrocyte5
immature adipocyte22
osteoblast11
preadipocyte11
stem cell
mesenchymal stem cell1
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