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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 504ChIP-seq
  • 189total RNA-seq
  • 22ATAC-seq
  • 5DNase-seq
  • 4Hi-C
  • 3pCHi-C
  • 3small RNA-seq
  • 2STARR-seq
  • 2WGBS
  • 1RRBS
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 504DNA binding
  • 193Transcription
  • 27DNA accessibility
  • 43D chromatin structure
  • 3DNA methylation
  • 1DNA sequencing
Target of assay
  • 334transcription factor
  • 97control
  • 82recombinant protein
  • 70histone
  • 70histone modification
  • 58RNA binding protein
  • 47narrow histone mark
  • 23broad histone mark
  • 23chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 315November, 2017
  • 194May, 2020
  • 63December, 2017
  • August, 2017
  • 53November, 2018
  • 40May, 2022
  • 35August, 2021
  • 10July, 2019
  • 7October, 2019
  • 5December, 2019
  • 5January, 2019
  • 3February, 2021
  • 3March, 2020
  • 2June, 2019
  • 1December, 2018
  • 1February, 2020
Available data
  • 655bam
  • 604bigWig
  • 437fastq
  • 423bed narrowPeak
  • 352bigBed narrowPeak
  • 174tsv
  • 66tagAlign
  • 63bed broadPeak
  • 63bigBed broadPeak
  • 10bed bed3+
  • 3tar
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 737Homo sapiens
Biosample type
  • 401cell line
  • 307tissue
  • 15in vitro differentiated cells
  • 14primary cell
Organ
  • 758pancreas
  • 737liver
  • 559connective tissue
  • 495epithelium
  • 434adipose tissue
  • 393heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 70musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 737AMP
Genome assembly (visualization)
  • 605hg19
  • 512GRCh38
Lab
  • 666AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 31Bing Ren, UCSD
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 13missing controlled_by
Audit category:
  • 26inconsistent control read length
  • 8inconsistent control run_type
month_released!
  • August, 2017
BIOSAMPLE
ASSAY

737 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
WGBS
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG237814122211
tissue
liver971672021111
right lobe of liver103121
in vitro differentiated cells
hepatocyte15
primary cell
hepatocyte4511
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
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