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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
14
ChIP-seq
6
Hi-C
6
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
RRBS
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
14
DNA binding
9
Transcription
6
3D chromatin structure
2
DNA methylation
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
control
Date released
41
June, 2019
August, 2017
10
July, 2019
6
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
55
bigWig
54
bam
47
bed narrowPeak
47
bigBed narrowPeak
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
9
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
txt
Organism
67
Homo sapiens
Biosample type
55
tissue
12
primary cell
Organ
726
pancreas
640
liver
538
connective tissue
477
epithelium
416
adipose tissue
373
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
67
musculature of body
63
blood
63
bodily fluid
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
67
AMP
Genome assembly (visualization)
58
hg19
53
GRCh38
Lab
67
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
month_released!
August, 2017
organ_slims!
eye
target.investigated_as!
control
BIOSAMPLE
ASSAY
67 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
RRBS
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of leg
13
6
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
skeletal muscle tissue
1
1
1
1
1
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
1
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