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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 33DNase-seq
  • 17ChIP-seq
  • 6Hi-C
  • 6total RNA-seq
  • 2small RNA-seq
  • 1ATAC-seq
  • 1RRBS
  • 1WGBS
  • 1pCHi-C
  • 1single cell RNA-seq
  • 1snATAC-seq
Assay category
  • 35DNA accessibility
  • 17DNA binding
  • 9Transcription
  • 63D chromatin structure
  • 2DNA methylation
Target of assay
  • 14histone
  • 14histone modification
  • 8broad histone mark
  • 6narrow histone mark
  • 3control
Date released
  • 43June, 2019
  • August, 2017
  • 10July, 2019
  • 7May, 2019
  • 5March, 2020
  • 2February, 2020
  • 2May, 2022
  • 1January, 2018
Available data
  • 57bam
  • 55bigWig
  • 47bed narrowPeak
  • 47bigBed narrowPeak
  • 34bed bed3+
  • 33bed broadPeak
  • 33bigBed broadPeak
  • 9tsv
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hic
  • 1txt
Organism
  • 70Homo sapiens
Biosample type
  • 56tissue
  • 14primary cell
Organ
  • 758pancreas
  • 737liver
  • 559connective tissue
  • 495epithelium
  • 434adipose tissue
  • 393heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 70musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 70AMP
Genome assembly (visualization)
  • 58hg19
  • 53GRCh38
Lab
  • 70AMP-T2D consortium
Audit category:
  • 9inconsistent ontology term
  • 1audit script error
month_released!
  • August, 2017
BIOSAMPLE
ASSAY

70 results

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Clear Filters
DNase-seq
ChIP-seq
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
RRBS
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of leg1371
muscle of arm17
gastrocnemius medialis41
psoas muscle221
skeletal muscle tissue11111
primary cell
skeletal muscle satellite cell811
skeletal muscle cell121
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