Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 308total RNA-seq
  • 149ATAC-seq
  • 124ChIP-seq
  • 80single cell RNA-seq
  • 51WGBS
  • 11snATAC-seq
  • 10MeRIP-seq
  • 9Hi-C
  • 7DNase-seq
  • 2Capture-C
  • 2RRBS
  • 2small RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1FAIRE-seq
  • 1pCHi-C
Assay category
  • 390Transcription
  • 168DNA accessibility
  • 124DNA binding
  • 53DNA methylation
  • 93D chromatin structure
Target of assay
  • 85histone
  • 85histone modification
  • 46broad histone mark
  • 39narrow histone mark
  • 32control
  • 12transcription factor
  • 7RNA binding protein
  • 5nucleotide modification
Date released
  • August, 2017
  • 157July, 2018
  • 104May, 2022
  • 72September, 2018
  • 61May, 2021
  • 56February, 2023
  • 55November, 2019
  • 53October, 2018
  • 39April, 2018
  • 32February, 2021
  • 19September, 2020
  • 18October, 2019
  • 14March, 2020
  • 11September, 2017
  • 10November, 2020
  • 8January, 2021
  • 7August, 2020
  • 7November, 2018
  • 6July, 2019
  • 5March, 2019
  • 5October, 2017
  • 4August, 2021
  • 4June, 2019
  • 3August, 2018
  • 3October, 2022
  • 2May, 2019
  • 1August, 2022
  • 1February, 2020
  • 1June, 2018
Available data
  • 521bam
  • 464bigWig
  • 328tsv
  • 303fastq
  • 165bed narrowPeak
  • 80zippedFastqFolder
  • 74bigBed narrowPeak
  • 10bed bed3+
  • 9bed broadPeak
  • 7bedpe bed3+
  • 7bigBed broadPeak
  • 7hic
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6txt
  • 3cool
  • 3tagAlign
  • 1bedpe
  • 1hdf5
Organism
  • 757Homo sapiens
Biosample type
  • 358tissue
  • 305primary cell
  • 92cell line
  • 3in vitro differentiated cells
Organ
  • 758pancreas
  • 737liver
  • 559connective tissue
  • 495epithelium
  • 434adipose tissue
  • 393heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 70musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 572AMP
  • 152HPAP
  • 34T1D
Genome assembly (visualization)
  • 499hg19
  • 483GRCh38
Lab
  • 537AMP-T2D consortium
  • 152Klaus Kaestner, Upenn
  • 51Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 81inconsistent ontology term
  • 4audit script error
Audit category:
  • 32missing controlled_by
Audit category:
  • 1inconsistent assembly
  • 1inconsistent control read length
month_released!
  • August, 2017
BIOSAMPLE
ASSAY

758 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
DNase-seq
Capture-C
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
pCHi-C
tissue
islet of Langerhans18958867431
body of pancreas3435242
endocrine pancreas16
pancreas222412111
primary cell
pancreatic alpha cell523412311
pancreatic beta cell212212161
pancreatic acinar cell488121
pancreatic ductal cell441310
pancreatic delta cell11
cell line
EndoC_BH13319156121
Panc11311
in vitro differentiated cells
pancreatic PP cell3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego