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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 707ChIP-seq
  • 241total RNA-seq
  • 195ATAC-seq
  • 95single cell RNA-seq
  • 49pCHi-C
  • 45DNase-seq
  • 19Hi-C
  • 15RRBS
  • 12snATAC-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 8WGBS
  • 4FAIRE-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 707DNA binding
  • 347Transcription
  • 256DNA accessibility
  • 24DNA methylation
  • 193D chromatin structure
Target of assay
  • 400transcription factor
  • 237histone
  • 237histone modification
  • 141narrow histone mark
  • 96broad histone mark
  • 88recombinant protein
  • 79RNA binding protein
  • 73control
  • 31chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 148May, 2021
  • 144May, 2020
  • 124October, 2019
  • 66August, 2021
  • 64November, 2018
  • 62December, 2017
  • 62June, 2019
  • 60July, 2019
  • August, 2017
  • 53February, 2023
  • 48March, 2020
  • 45July, 2018
  • 43February, 2021
  • 39April, 2018
  • 28December, 2018
  • 25February, 2020
  • 24November, 2019
  • 21January, 2019
  • 14May, 2019
  • 10November, 2020
  • 8October, 2018
  • 7December, 2019
  • 7October, 2017
  • 5January, 2021
  • 5March, 2019
  • 3August, 2018
  • 3October, 2022
  • 2April, 2019
  • 2May, 2022
  • 2September, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 1107bam
  • 1029bigWig
  • 693bed narrowPeak
  • 575fastq
  • 511bigBed narrowPeak
  • 371tsv
  • 130tagAlign
  • 110bed broadPeak
  • 108bigBed broadPeak
  • 75bed bed3+
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1423Homo sapiens
Biosample type
  • 463cell line
  • 457primary cell
  • 324tissue
  • 175in vitro differentiated cells
  • 4stem cell
Organ
  • 422liver
  • 181pancreas
  • 168epithelium
  • 96brain
  • 58blood
  • 58bodily fluid
  • 58kidney
  • 56connective tissue
  • 49vasculature
  • 44blood vessel
  • 41heart
  • 20musculature of body
  • 19vein
  • 13adipose tissue
  • 13embryo
  • 11artery
  • 9bone element
  • 8limb
  • 8skeleton
  • 7eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 1252AMP
  • 161T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 1103hg19
  • 957GRCh38
Lab
  • 1205AMP-T2D consortium
  • 173Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 134inconsistent ontology term
  • 28inconsistent control
  • 6audit script error
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 33inconsistent control read length
  • 8inconsistent control run_type
  • 1inconsistent assembly
month_released!
  • August, 2017
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1423 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
Hi-C
RRBS
snATAC-seq
small RNA-seq
MeRIP-seq
WGBS
FAIRE-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
snDrop-seq
DNAme array
cell line
HepG2335512112
GM1287856
EndoC_BH122263
Panc11111
H1-hESC8
primary cell
monocyte4726211
naive thymus-derived CD4-positive, alpha-beta T cell21221
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein16111
pancreatic alpha cell1116
tissue
islet of Langerhans4103762134
liver393111
brain111121
heart531411
kidney12141
in vitro differentiated cells
neural progenitor cell21710
embryonic stem cell11551
cardiac precursors (cardiac muscle cell)1911
hepatocyte15
cardiomyocytes12
stem cell
hESC3
mesenchymal stem cell1
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