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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 558ChIP-seq
  • 90ATAC-seq
  • 51total RNA-seq
  • 21pCHi-C
  • 19DNase-seq
  • 15RRBS
  • 10Hi-C
  • 8WGBS
  • 7snATAC-seq
  • 6MeRIP-seq
  • 6single cell RNA-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 1FAIRE-seq
Assay category
  • 558DNA binding
  • 117DNA accessibility
  • 57Transcription
  • 23DNA methylation
  • 103D chromatin structure
Target of assay
  • 385transcription factor
  • 116histone
  • 116histone modification
  • 88recombinant protein
  • 71RNA binding protein
  • 59broad histone mark
  • 58control
  • 57narrow histone mark
  • 31chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 74October, 2019
  • 62November, 2018
  • 59December, 2017
  • 56May, 2020
  • 32February, 2021
  • 32June, 2019
  • 28December, 2018
  • 24July, 2019
  • August, 2017
  • 23November, 2019
  • 21January, 2019
  • 18August, 2021
  • 16March, 2020
  • 14May, 2019
  • 14May, 2021
  • 7December, 2019
  • 7October, 2018
  • 6February, 2023
  • 6November, 2020
  • 3January, 2021
  • 1April, 2019
  • 1July, 2018
Available data
  • 657bam
  • 593bigWig
  • 538bed narrowPeak
  • 479fastq
  • 472bigBed narrowPeak
  • 84bed broadPeak
  • 84bigBed broadPeak
  • 69tsv
  • 39bed bed3+
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 14tagAlign
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 799Homo sapiens
Biosample type
  • 463cell line
  • 155primary cell
  • 108tissue
  • 70in vitro differentiated cells
  • 3stem cell
Organ
  • 409liver
  • 87epithelium
  • 62pancreas
  • 56blood
  • 56bodily fluid
  • 42vasculature
  • 39kidney
  • 37blood vessel
  • 25brain
  • 18vein
  • 16heart
  • 11embryo
  • 11musculature of body
  • 10connective tissue
  • 7artery
  • 5limb
  • 4eye
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 770AMP
  • 23T1D
  • 6HPAP
Genome assembly (visualization)
  • 642hg19
  • 563GRCh38
Lab
  • 755AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 6Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 83inconsistent ontology term
  • 28inconsistent control
  • 2audit script error
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 33inconsistent control read length
  • 8inconsistent control run_type
  • 1inconsistent assembly
month_released!
  • August, 2017
BIOSAMPLE
ASSAY

799 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
DNase-seq
RRBS
Hi-C
WGBS
snATAC-seq
MeRIP-seq
single cell RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
cell line
HepG2335152112
GM1287856
EndoC_BH122263
Panc11111
H1-hESC8
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
endothelial cell of umbilical vein1611
macrophage11
skeletal muscle satellite cell8
tissue
liver361
islet of Langerhans1911
body of pancreas7
brain511
thoracic aorta7
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1191
hepatocyte15
cardiomyocytes (cardiac muscle cell)12122
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
adipocyte4
stem cell
hESC3
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