Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2640pQTL
  • 1709candidate regulatory elements
  • 1357target gene predictions
  • 977histone modifications
  • 913accessible chromatin
  • 909chromatin state
  • 817binding sites
  • 689gene expression
  • 189eQTL
  • 172differential activity
  • 84Fine-mapped variants
  • 13caQTL
  • 7sQTL
  • 5hQTL
  • 5variant allelic effects
  • 4variant to gene
  • 3meQTL
  • 3other
  • 1representative DNase hypersensitivity sites
Date released
  • 2639February, 2025
  • 2589February, 2021
  • 2511September, 2022
  • 389May, 2021
  • 333November, 2021
  • 322February, 2024
  • 289June, 2020
  • 286September, 2023
  • 128August, 2021
  • 128March, 2020
  • 106January, 2022
  • 101October, 2022
  • 89January, 2020
  • 76May, 2020
  • 70March, 2023
  • 64February, 2020
  • 56January, 2021
  • 49May, 2022
  • 44November, 2022
  • 40May, 2024
  • 38March, 2025
  • August, 2017
  • 32February, 2023
  • 30March, 2024
  • 19April, 2020
  • 14November, 2019
  • 14October, 2019
  • 9August, 2018
  • 9May, 2019
  • 8April, 2019
  • 3November, 2020
  • 3September, 2018
  • 2January, 2018
  • 2January, 2025
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1June, 2021
Available data
  • 5930bed bed3+
  • 3576tsv
  • 869bed bed9
  • 542bigWig
  • 108txt
  • 36bigBed bed9
  • 34bed bed9+
  • 26csv
  • 12bigBed narrowPeak
  • 3bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 10449Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 2499EpiMap
  • 1848ChIP-Atlas
  • 964ENCODE
  • 534AMP
  • 516DGA
  • 421T1D
  • 401T2DKP
  • 281KPMP
  • 219BLUEPRINT
  • 1744DN
  • 164 T2DKP
  • 151GTEx
  • 111T2D
  • 101eQTLCatalogue
  • 100CMDGA
  • 67HPAP
  • 43STARNET
  • 26FNIH_projects-heart
  • 12FNIH_projects-liver
  • 12ROADMAP
Biosample type
  • 5256tissue
  • 2431primary cell
  • 2345cell line
  • 460in vitro differentiated cells
  • 3stem cell
Organ
  • 2897vasculature
  • 2857bodily fluid
  • 2846blood
  • 2838blood vessel
  • 2656vein
  • 914epithelium
  • 636kidney
  • 457connective tissue
  • 444brain
  • 370musculature of body
  • 309lung
  • 282intestine
  • 263pancreas
  • 247heart
  • 236limb
  • 214embryo
  • 202skin of body
  • 171large intestine
  • 156liver
  • 146extraembryonic component
  • 116stomach
  • 107eye
  • 94adipose tissue
  • 89bone element
  • 85mammary gland
  • 83small intestine
  • 83uterus
  • 77prostate gland
  • 75artery
  • 73placenta
  • 72adrenal gland
  • 64penis
  • 62lymph node
  • 61ureter
  • 50gonad
  • 49thymus
  • 43esophagus
  • 43spinal cord
  • 34spleen
  • 26testis
  • 24lymphatic vessel
  • 24lymphoid tissue
  • 23nerve
  • 23ovary
  • 22thyroid gland
  • 19mouth
  • 18skeleton
  • 15bronchus
  • 13bone marrow
  • 13breast
  • 13pituitary gland
  • 10tongue
  • 10urinary bladder
  • 10vagina
  • 5trachea
  • 4nose
  • 1pericardium
Project
  • 9786AMP
  • 333ENCODE
  • 281KPMP
  • 60T1D
  • 19LungMap
  • 13community
  • 5ITG
Genome assembly (visualization)
  • 6847hg19
  • 1909GRCh38
  • 4hg18
month_released!
  • August, 2017
software_used.software.name!
  • deltasvm
BIOSAMPLE
TYPE

10497 results

search-icontable-tab-icon
Clear Filters
pQTL
candidate regulatory elements
target gene predictions
histone modifications
accessible chromatin
chromatin state
binding sites
gene expression
eQTL
differential activity
Fine-mapped variants
caQTL
sQTL
hQTL
variant allelic effects
variant to gene
meQTL
other
representative DNase hypersensitivity sites
tissue
whole blood26351
heart3720152113
stomach4021131911
kidney291421016171
brain29163218112
primary cell
monocyte286181154121
common myeloid progenitor, CD34-positive271413
CD8-positive, alpha-beta T cell7530413
B cell1710682
endothelial cell371152912
cell line
HeLa-S355531
A549211911182
H1-hESC13911128
K5627231162
MCF-7962153
in vitro differentiated cells
neural progenitor cell55151047
hematopoietic multipotent progenitor cell1910111011
adipocyte4614211
embryonic stem cell11651
cardiomyocytes11
stem cell
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego