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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 392ChIP-seq
Assay category
  • 392DNA binding
Target of assay
  • 818histone
  • 818histone modification
  • 467transcription factor
  • 426narrow histone mark
  • 392broad histone mark
  • 293control
  • 106RNA binding protein
  • 89recombinant protein
  • 33chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • August, 2017
  • 76May, 2021
  • 58May, 2019
  • 55October, 2019
  • 50November, 2017
  • 37April, 2019
  • 20May, 2024
  • 19October, 2018
  • 17September, 2018
  • 15December, 2017
  • 10October, 2017
  • 9August, 2021
  • 8February, 2018
  • 8June, 2019
  • 6November, 2019
  • 4January, 2019
Available data
  • 366bigWig
  • 364bed narrowPeak
  • 329bam
  • 224bigBed narrowPeak
  • 102tagAlign
  • 69fastq
  • 14bed broadPeak
  • 10bigBed broadPeak
  • 6bed bed3+
Organism
  • 392Homo sapiens
Biosample type
  • 230tissue
  • 106primary cell
  • 36in vitro differentiated cells
  • 19cell line
  • 1stem cell
Organ
  • 70brain
  • 57heart
  • 46pancreas
  • 45blood vessel
  • 45vasculature
  • 38epithelium
  • 34limb
  • 23liver
  • 16nerve
  • 15kidney
  • 14artery
  • 9vein
  • 8musculature of body
  • 4connective tissue
  • 4embryo
  • 4spleen
Project
  • 348AMP
  • 44T1D
Genome assembly (visualization)
  • 343GRCh38
  • 310hg19
Lab
  • 297AMP-T2D consortium
  • 74Kyle Gaulton, UCSD
  • 20Patrick T. Ellinor, Broad
  • 1Bing Ren, UCSD
Audit category:
  • 14inconsistent ontology term
Audit category:
  • 20missing controlled_by
Audit category:
  • 12inconsistent control read length
month_released!
  • August, 2017
BIOSAMPLE
ASSAY

392 results

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Clear Filters
ChIP-seq
tissue
left cardiac atrium20
tibial nerve16
heart left ventricle15
tibial artery14
brain13
primary cell
monocyte44
CD8-positive, alpha-beta T cell20
endothelial cell of umbilical vein9
pancreatic endocrine cell7
pancreatic ductal cell6
in vitro differentiated cells
embryonic stem cell11
hepatocyte7
neural progenitor cell7
pancreatic endoderm4
definitive endodermal cell2
cell line
HepG29
EndoC_BH16
Panc14
stem cell
hESC1
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