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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 818ChIP-seq
Assay category
  • 818DNA binding
Target of assay
  • 818histone
  • 818histone modification
  • 467transcription factor
  • 426narrow histone mark
  • 392broad histone mark
  • 293control
  • 106RNA binding protein
  • 89recombinant protein
  • 33chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • August, 2017
  • 196October, 2019
  • 140May, 2021
  • 92May, 2019
  • 88November, 2017
  • 60April, 2019
  • 35May, 2024
  • 32September, 2018
  • 31December, 2017
  • 30October, 2018
  • 27May, 2020
  • 20August, 2021
  • 19June, 2019
  • 16February, 2018
  • 12October, 2017
  • 10November, 2019
  • 7January, 2019
  • 3March, 2020
Available data
  • 746bigWig
  • 743bed narrowPeak
  • 682bam
  • 361bigBed narrowPeak
  • 247tagAlign
  • 127fastq
  • 28bed broadPeak
  • 19bigBed broadPeak
  • 13bed bed3+
  • 1tagAlign bed3+
Organism
  • 818Homo sapiens
Biosample type
  • 504tissue
  • 199primary cell
  • 75in vitro differentiated cells
  • 38cell line
  • 2stem cell
Organ
  • 187brain
  • 97heart
  • 85pancreas
  • 79epithelium
  • 71vasculature
  • 70blood vessel
  • 70liver
  • 49limb
  • 30kidney
  • 24nerve
  • 20artery
  • 15vein
  • 14musculature of body
  • 12embryo
  • 9connective tissue
  • 6spleen
  • 4gonad
  • 4ovary
  • 3eye
  • 1blood
  • 1bodily fluid
  • 1lymph node
  • 1pituitary gland
Project
  • 730AMP
  • 88T1D
Genome assembly (visualization)
  • 701GRCh38
  • 661hg19
Lab
  • 646AMP-T2D consortium
  • 134Kyle Gaulton, UCSD
  • 35Patrick T. Ellinor, Broad
  • 3Bing Ren, UCSD
Audit category:
  • 33inconsistent ontology term
Audit category:
  • 38missing controlled_by
Audit category:
  • 21inconsistent control read length
month_released!
  • August, 2017
BIOSAMPLE
ASSAY

818 results

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Clear Filters
ChIP-seq
tissue
left cardiac atrium35
liver32
heart left ventricle24
tibial nerve24
islet of Langerhans23
primary cell
monocyte85
CD8-positive, alpha-beta T cell30
endothelial cell of umbilical vein15
pancreatic ductal cell13
pancreatic endocrine cell11
in vitro differentiated cells
embryonic stem cell22
neural progenitor cell14
hepatocyte12
pancreatic endoderm10
definitive endodermal cell4
cell line
HepG218
EndoC_BH112
Panc17
GM128781
stem cell
hESC2
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