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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 426ChIP-seq
Assay category
  • 426DNA binding
Target of assay
  • 818histone
  • 818histone modification
  • 467transcription factor
  • 426narrow histone mark
  • 392broad histone mark
  • 293control
  • 106RNA binding protein
  • 89recombinant protein
  • 33chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 141October, 2019
  • August, 2017
  • 64May, 2021
  • 38November, 2017
  • 34May, 2019
  • 27May, 2020
  • 23April, 2019
  • 16December, 2017
  • 15May, 2024
  • 15September, 2018
  • 11August, 2021
  • 11June, 2019
  • 11October, 2018
  • 8February, 2018
  • 4November, 2019
  • 3January, 2019
  • 3March, 2020
  • 2October, 2017
Available data
  • 380bigWig
  • 379bed narrowPeak
  • 353bam
  • 145tagAlign
  • 137bigBed narrowPeak
  • 58fastq
  • 14bed broadPeak
  • 9bigBed broadPeak
  • 7bed bed3+
  • 1tagAlign bed3+
Organism
  • 426Homo sapiens
Biosample type
  • 274tissue
  • 93primary cell
  • 39in vitro differentiated cells
  • 19cell line
  • 1stem cell
Organ
  • 117brain
  • 47liver
  • 41epithelium
  • 40heart
  • 39pancreas
  • 26vasculature
  • 25blood vessel
  • 15kidney
  • 15limb
  • 8embryo
  • 8nerve
  • 6artery
  • 6musculature of body
  • 6vein
  • 5connective tissue
  • 4gonad
  • 4ovary
  • 3eye
  • 2spleen
  • 1blood
  • 1bodily fluid
  • 1lymph node
  • 1pituitary gland
Project
  • 382AMP
  • 44T1D
Genome assembly (visualization)
  • 358GRCh38
  • 351hg19
Lab
  • 349AMP-T2D consortium
  • 60Kyle Gaulton, UCSD
  • 15Patrick T. Ellinor, Broad
  • 2Bing Ren, UCSD
Audit category:
  • 19inconsistent ontology term
Audit category:
  • 18missing controlled_by
Audit category:
  • 9inconsistent control read length
month_released!
  • August, 2017
BIOSAMPLE
ASSAY

426 results

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Clear Filters
ChIP-seq
tissue
liver29
islet of Langerhans23
left cardiac atrium15
kidney10
heart left ventricle9
primary cell
monocyte41
CD8-positive, alpha-beta T cell10
pancreatic ductal cell7
endothelial cell of umbilical vein6
epithelial cell of proximal tubule4
in vitro differentiated cells
embryonic stem cell11
neural progenitor cell7
pancreatic endoderm6
hepatocyte5
Hepatic endoderm2
cell line
HepG29
EndoC_BH16
Panc13
GM128781
stem cell
hESC1
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