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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 467ChIP-seq
Assay category
  • 467DNA binding
Target of assay
  • 818histone
  • 818histone modification
  • 467transcription factor
  • 426narrow histone mark
  • 392broad histone mark
  • 293control
  • 106RNA binding protein
  • 89recombinant protein
  • 33chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 244November, 2017
  • 64November, 2018
  • August, 2017
  • 42December, 2017
  • 28December, 2018
  • 16May, 2021
  • 15October, 2018
  • 14January, 2019
  • 11August, 2021
  • 7October, 2019
  • 6April, 2019
  • 5February, 2021
  • 5May, 2019
  • 5May, 2024
  • 4June, 2019
  • 1November, 2019
Available data
  • 449bigWig
  • 445bed narrowPeak
  • 438bam
  • 407fastq
  • 403bigBed narrowPeak
  • 47bed broadPeak
  • 47bigBed broadPeak
  • 9tagAlign
  • 3tar
Organism
  • 467Homo sapiens
Biosample type
  • 361cell line
  • 71tissue
  • 27in vitro differentiated cells
  • 8primary cell
Organ
  • 334liver
  • 51blood
  • 51bodily fluid
  • 17heart
  • 12pancreas
  • 10kidney
  • 9epithelium
  • 9vasculature
  • 8blood vessel
  • 6connective tissue
  • 6spleen
  • 5adipose tissue
  • 5artery
  • 3brain
  • 3embryo
  • 1eye
Project
  • 467AMP
Genome assembly (visualization)
  • 440hg19
  • 402GRCh38
Lab
  • 439AMP-T2D consortium
  • 12Kyle Gaulton, UCSD
  • 11Bing Ren, UCSD
  • 5Patrick T. Ellinor, Broad
Audit category:
  • 28inconsistent control
  • 14inconsistent ontology term
Audit category:
  • 12missing controlled_by
Audit category:
  • 19inconsistent control read length
  • 8inconsistent control run_type
month_released!
  • August, 2017
BIOSAMPLE
ASSAY

467 results

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Clear Filters
ChIP-seq
cell line
HepG2297
GM1287851
smooth muscle cell of the coronary artery4
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
tissue
liver33
body of pancreas9
spleen6
heart left ventricle5
left cardiac atrium5
in vitro differentiated cells
embryonic stem cell12
cardiomyocytes3
pancreatic endoderm3
Posterior foregut2
definitive endodermal cell2
primary cell
astrocyte of the cerebellum1
brain microvascular endothelial cell1
cardiac fibroblast1
cardiac muscle cell1
choroid plexus epithelial cell1
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