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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
14
total RNA-seq
1
ATAC-seq
1
GRO-seq
Assay category
19
DNA binding
14
Transcription
1
DNA accessibility
Target of assay
11
histone
11
histone modification
7
narrow histone mark
5
control
4
broad histone mark
3
transcription factor
Date released
13
February, 2018
9
December, 2017
8
August, 2021
2
May, 2021
2
October, 2019
1
January, 2018
Available data
33
bam
28
bigWig
23
fastq
14
tsv
13
bed narrowPeak
3
bed bed3+
1
tagAlign
Organism
35
Homo sapiens
Biosample type
25
in vitro differentiated cells
8
cell line
2
tissue
Organ
939
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
35
AMP
Genome assembly (visualization)
28
GRCh38
28
hg19
1
hg18
Lab
35
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
month_released!
August, 2020
organ_slims!
epithelium
small intestine
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
4
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
tissue
islet of Langerhans
1
pituitary gland
1
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