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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
530
ChIP-seq
176
total RNA-seq
22
ATAC-seq
6
DNase-seq
4
WGBS
2
Hi-C
2
pCHi-C
1
RRBS
Assay category
530
DNA binding
176
Transcription
28
DNA accessibility
5
DNA methylation
2
3D chromatin structure
Target of assay
327
transcription factor
103
control
97
histone modification
96
histone
82
recombinant protein
57
RNA binding protein
56
narrow histone mark
40
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
August, 2021
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
669
bam
597
bigWig
465
fastq
423
bed narrowPeak
358
bigBed narrowPeak
158
tsv
82
tagAlign
63
bed broadPeak
63
bigBed broadPeak
8
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
hic
Organism
743
Homo sapiens
Biosample type
368
cell line
352
tissue
15
in vitro differentiated cells
8
primary cell
Organ
904
pancreas
743
liver
473
epithelium
268
brain
210
heart
206
connective tissue
205
kidney
152
vasculature
147
blood vessel
111
limb
92
adipose tissue
86
musculature of body
70
artery
69
blood
69
bodily fluid
60
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
743
AMP
Genome assembly (visualization)
596
hg19
520
GRCh38
Lab
703
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2021
February, 2021
July, 2019
BIOSAMPLE
ASSAY
743 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
cell line
HepG2
360
5
1
1
1
tissue
liver
145
165
20
2
3
1
1
1
right lobe of liver
10
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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