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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
530
ChIP-seq
176
total RNA-seq
23
ATAC-seq
4
DNase-seq
4
WGBS
3
pCHi-C
2
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
530
DNA binding
177
Transcription
27
DNA accessibility
5
DNA methylation
2
3D chromatin structure
Target of assay
327
transcription factor
103
control
97
histone modification
96
histone
82
recombinant protein
57
RNA binding protein
56
narrow histone mark
40
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
August, 2021
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
June, 2019
1
December, 2018
1
February, 2020
Available data
668
bam
595
bigWig
465
fastq
422
bed narrowPeak
356
bigBed narrowPeak
158
tsv
82
tagAlign
61
bed broadPeak
61
bigBed broadPeak
7
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
csv
1
hic
Organism
744
Homo sapiens
Biosample type
370
cell line
353
tissue
15
in vitro differentiated cells
6
primary cell
Organ
932
pancreas
744
liver
643
connective tissue
485
epithelium
477
adipose tissue
241
heart
238
brain
211
vasculature
208
blood vessel
159
bone element
134
artery
132
kidney
85
limb
69
blood
69
bodily fluid
53
eye
43
musculature of body
43
nerve
29
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
744
AMP
Genome assembly (visualization)
596
hg19
519
GRCh38
Lab
704
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2021
July, 2019
June, 2019
BIOSAMPLE
ASSAY
744 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
RRBS
single cell RNA-seq
cell line
HepG2
360
5
1
1
2
1
tissue
liver
145
165
20
2
3
1
1
1
1
right lobe of liver
10
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
Liver fetal (hepatocyte)
1
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