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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
564
ChIP-seq
230
total RNA-seq
67
ATAC-seq
10
DNase-seq
4
WGBS
3
pCHi-C
2
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
564
DNA binding
231
Transcription
77
DNA accessibility
5
DNA methylation
2
3D chromatin structure
Target of assay
332
transcription factor
117
histone modification
116
histone
112
control
82
recombinant protein
62
narrow histone mark
58
RNA binding protein
54
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
69
February, 2021
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
August, 2021
35
February, 2023
33
October, 2019
July, 2019
5
December, 2019
5
January, 2019
5
May, 2019
4
June, 2019
3
February, 2020
3
March, 2020
1
December, 2018
Available data
769
bam
679
bigWig
497
bed narrowPeak
465
fastq
383
bigBed narrowPeak
212
tsv
88
tagAlign
67
bed broadPeak
67
bigBed broadPeak
13
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
csv
1
hic
Organism
882
Homo sapiens
Biosample type
436
cell line
423
tissue
15
in vitro differentiated cells
8
primary cell
Organ
936
pancreas
746
liver
661
connective tissue
505
epithelium
478
adipose tissue
276
heart
268
brain
218
vasculature
213
blood vessel
213
kidney
159
bone element
136
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
882
AMP
Genome assembly (visualization)
688
hg19
646
GRCh38
Lab
842
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2021
July, 2019
BIOSAMPLE
ASSAY
882 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
RRBS
single cell RNA-seq
cell line
HepG2
360
5
1
1
2
1
smooth muscle cell of the coronary artery
6
52
8
tissue
liver
145
165
20
2
3
1
1
1
1
coronary artery
5
1
35
2
tibial artery
23
1
1
2
right lobe of liver
10
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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