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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
590
ChIP-seq
176
total RNA-seq
24
ATAC-seq
8
snATAC-seq
6
DNase-seq
4
WGBS
3
pCHi-C
2
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
590
DNA binding
177
Transcription
38
DNA accessibility
5
DNA methylation
2
3D chromatin structure
Target of assay
378
transcription factor
109
control
98
histone modification
97
histone
82
recombinant protein
67
RNA binding protein
57
narrow histone mark
40
broad histone mark
33
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
68
November, 2018
63
December, 2017
54
August, 2017
40
May, 2022
August, 2021
28
December, 2018
23
January, 2019
July, 2019
8
January, 2021
7
October, 2019
5
December, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
February, 2020
1
January, 2018
Available data
730
bam
652
bigWig
525
fastq
478
bed narrowPeak
412
bigBed narrowPeak
158
tsv
82
tagAlign
63
bed broadPeak
63
bigBed broadPeak
9
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
csv
1
hic
Organism
815
Homo sapiens
Biosample type
431
cell line
353
tissue
16
primary cell
15
in vitro differentiated cells
Organ
936
pancreas
746
liver
661
connective tissue
505
epithelium
478
adipose tissue
276
heart
268
brain
218
vasculature
213
blood vessel
213
kidney
159
bone element
136
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
807
AMP
8
T1D
Genome assembly (visualization)
653
hg19
575
GRCh38
Lab
767
AMP-T2D consortium
40
Karen Mohlke, UNC
8
Kyle Gaulton, UCSD
Audit category:
28
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2021
July, 2019
BIOSAMPLE
ASSAY
815 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
RRBS
single cell RNA-seq
cell line
HepG2
360
5
1
1
2
1
GM12878
60
1
tissue
liver
145
165
20
2
3
1
1
1
1
right lobe of liver
10
1
1
2
primary cell
peripheral blood mononuclear cell
8
hepatocyte
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
15
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