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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
ChIP-seq
176
total RNA-seq
23
ATAC-seq
6
DNase-seq
4
WGBS
3
pCHi-C
2
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
474
DNA binding
177
Transcription
29
DNA accessibility
5
DNA methylation
2
3D chromatin structure
Target of assay
327
transcription factor
103
control
97
histone modification
96
histone
82
recombinant protein
57
RNA binding protein
narrow histone mark
40
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
308
November, 2017
167
May, 2020
56
December, 2017
53
November, 2018
41
August, 2017
40
May, 2022
August, 2021
July, 2019
5
December, 2019
5
January, 2019
5
October, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
622
bam
549
bigWig
446
fastq
377
bed narrowPeak
344
bigBed narrowPeak
158
tsv
57
bed broadPeak
57
bigBed broadPeak
44
tagAlign
9
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
csv
1
hic
Organism
690
Homo sapiens
Biosample type
363
cell line
309
tissue
10
in vitro differentiated cells
8
primary cell
Organ
863
pancreas
690
liver
628
connective tissue
466
adipose tissue
458
epithelium
236
heart
198
kidney
192
vasculature
188
blood vessel
159
bone element
151
brain
130
artery
102
limb
73
musculature of body
68
blood
68
bodily fluid
57
eye
35
nerve
23
spleen
21
embryo
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
690
AMP
Genome assembly (visualization)
550
hg19
482
GRCh38
Lab
650
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2021
July, 2019
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
690 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
RRBS
single cell RNA-seq
cell line
HepG2
353
5
1
1
2
1
tissue
liver
103
165
20
2
3
1
1
1
1
right lobe of liver
8
1
1
2
in vitro differentiated cells
hepatocyte
10
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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