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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
530
ChIP-seq
180
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
3
small RNA-seq
2
Hi-C
2
RRBS
2
pCHi-C
1
single cell RNA-seq
Assay category
530
DNA binding
184
Transcription
29
DNA accessibility
7
DNA methylation
2
3D chromatin structure
Target of assay
327
transcription factor
103
control
97
histone modification
96
histone
82
recombinant protein
57
RNA binding protein
56
narrow histone mark
40
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
March, 2020
2
February, 2020
2
June, 2019
1
December, 2018
Available data
676
bam
604
bigWig
465
fastq
424
bed narrowPeak
358
bigBed narrowPeak
164
tsv
82
tagAlign
63
bed broadPeak
63
bigBed broadPeak
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
csv
1
hdf5
Organism
754
Homo sapiens
Biosample type
370
cell line
359
tissue
15
in vitro differentiated cells
10
primary cell
Organ
928
pancreas
753
liver
677
connective tissue
512
epithelium
489
adipose tissue
294
heart
284
brain
226
vasculature
222
kidney
220
blood vessel
159
bone element
139
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
29
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
754
AMP
Genome assembly (visualization)
605
hg19
527
GRCh38
Lab
714
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2021
March, 2020
organ_slims!
lymph node
BIOSAMPLE
ASSAY
754 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
cell line
HepG2
360
5
1
1
1
2
tissue
liver
145
166
20
2
3
1
1
1
right lobe of liver
10
3
1
2
1
2
C1 segment of cervical spinal cord
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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