Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
434
ChIP-seq
180
total RNA-seq
24
DNase-seq
23
ATAC-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
434
DNA binding
184
Transcription
47
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
327
transcription factor
103
control
97
histone modification
histone
82
recombinant protein
57
RNA binding protein
56
narrow histone mark
40
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
300
November, 2017
167
May, 2020
53
November, 2018
46
December, 2017
40
May, 2022
August, 2021
22
August, 2017
20
June, 2019
10
July, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
October, 2019
1
December, 2018
1
February, 2020
Available data
619
bam
547
bigWig
421
fastq
368
bed narrowPeak
341
bigBed narrowPeak
165
tsv
67
bed broadPeak
67
bigBed broadPeak
28
bed bed3+
27
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
678
Homo sapiens
Biosample type
355
cell line
310
tissue
10
primary cell
3
in vitro differentiated cells
Organ
790
pancreas
660
liver
601
connective tissue
458
adipose tissue
426
epithelium
196
heart
192
kidney
159
bone element
145
vasculature
140
blood vessel
116
artery
96
brain
72
limb
68
blood
68
bodily fluid
62
musculature of body
58
eye
20
lung
19
nerve
19
spleen
18
ureter
17
embryo
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
678
AMP
Genome assembly (visualization)
549
hg19
480
GRCh38
Lab
638
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2021
May, 2019
target.investigated_as!
histone
BIOSAMPLE
ASSAY
678 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
cell line
HepG2
345
5
1
1
1
2
tissue
liver
81
167
2
20
3
1
1
1
1
1
right lobe of liver
5
3
2
1
1
2
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
3
Download