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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
405
total RNA-seq
80
ChIP-seq
34
DNase-seq
17
ATAC-seq
7
WGBS
4
Hi-C
3
small RNA-seq
2
pCHi-C
Assay category
408
Transcription
80
DNA binding
51
DNA accessibility
7
DNA methylation
4
3D chromatin structure
Target of assay
38
histone
38
histone modification
25
control
24
broad histone mark
17
transcription factor
14
narrow histone mark
5
RNA binding protein
Date released
394
February, 2021
October, 2019
57
August, 2017
33
June, 2019
23
October, 2018
17
July, 2019
9
February, 2023
7
May, 2019
5
February, 2020
1
August, 2018
August, 2021
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
490
bam
463
bigWig
404
tsv
59
bed narrowPeak
47
bigBed narrowPeak
44
fastq
38
bed bed3+
35
bed broadPeak
34
bigBed broadPeak
8
tagAlign
4
bed bed3
4
txt
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
552
Homo sapiens
Biosample type
549
tissue
2
primary cell
1
in vitro differentiated cells
Organ
924
pancreas
749
liver
675
connective tissue
489
adipose tissue
483
epithelium
293
heart
200
brain
194
kidney
183
vasculature
177
blood vessel
159
bone element
113
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
29
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
552
AMP
Genome assembly (visualization)
475
hg19
470
GRCh38
Lab
552
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
August, 2021
October, 2019
BIOSAMPLE
ASSAY
552 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
small RNA-seq
pCHi-C
tissue
adipose tissue
382
2
2
3
1
subcutaneous abdominal adipose tissue
36
3
muscle of leg
7
13
1
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
2
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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