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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
6
total RNA-seq
1
GRO-seq
Assay category
22
DNA binding
6
Transcription
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
13
December, 2017
13
February, 2018
August, 2021
2
May, 2021
1
January, 2018
Available data
28
bam
27
fastq
21
bigWig
14
bed narrowPeak
6
tsv
3
bed bed3+
Organism
29
Homo sapiens
Biosample type
29
in vitro differentiated cells
Organ
934
pancreas
756
liver
679
connective tissue
517
epithelium
490
adipose tissue
301
heart
286
brain
230
vasculature
224
blood vessel
kidney
159
bone element
139
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
29
embryo
25
spleen
22
vein
19
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
29
AMP
Genome assembly (visualization)
21
GRCh38
21
hg19
1
hg18
Lab
29
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
August, 2021
organ_slims!
kidney
BIOSAMPLE
ASSAY
29 results
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ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
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