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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
473
ChIP-seq
180
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
473
DNA binding
184
Transcription
29
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
327
transcription factor
103
control
97
histone modification
96
histone
82
recombinant protein
RNA binding protein
56
narrow histone mark
40
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
281
November, 2017
194
May, 2020
59
December, 2017
54
August, 2017
40
May, 2022
August, 2021
34
November, 2018
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
620
bam
550
bigWig
408
fastq
369
bed narrowPeak
303
bigBed narrowPeak
165
tsv
82
tagAlign
59
bed broadPeak
59
bigBed broadPeak
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
699
Homo sapiens
Biosample type
359
tissue
317
cell line
13
in vitro differentiated cells
10
primary cell
Organ
925
pancreas
699
liver
669
connective tissue
509
epithelium
485
adipose tissue
290
heart
283
brain
225
vasculature
221
kidney
220
blood vessel
159
bone element
138
artery
122
limb
96
musculature of body
60
eye
59
blood
59
bodily fluid
43
nerve
29
embryo
25
spleen
22
vein
19
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
stomach
1
urinary bladder
Project
699
AMP
Genome assembly (visualization)
553
hg19
477
GRCh38
Lab
659
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
11
missing controlled_by
Audit category:
21
inconsistent control read length
5
inconsistent control run_type
month_released!
August, 2021
organ_slims!
stomach
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
699 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
tissue
liver
144
167
20
2
3
1
1
1
1
1
right lobe of liver
9
3
1
2
1
2
cell line
HepG2
307
5
1
1
1
2
in vitro differentiated cells
hepatocyte
13
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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