Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
93
accessible chromatin
82
target gene predictions
78
candidate regulatory elements
72
gene expression
50
chromatin state
37
differential activity
20
binding sites
20
histone modifications
15
variant allelic effects
11
eQTL
8
Fine-mapped variants
2
variant to gene
1
caQTL
1
sQTL
Date released
138
September, 2022
75
February, 2021
54
February, 2024
51
March, 2023
37
May, 2021
25
November, 2021
20
January, 2021
19
March, 2020
August, 2021
11
June, 2020
9
May, 2020
7
August, 2018
7
January, 2020
6
August, 2017
6
January, 2022
6
October, 2019
4
February, 2020
3
November, 2019
2
May, 2022
2
May, 2024
2
October, 2022
1
April, 2019
1
February, 2023
1
January, 2018
1
July, 2020
1
June, 2021
1
September, 2018
Available data
313
bed bed3+
104
tsv
82
bigWig
43
bed bed9
14
bigBed narrowPeak
6
csv
4
bam
3
bed gappedPeak
3
bigBed bed9
3
xls
Organism
490
Homo sapiens
Biosample type
218
tissue
198
primary cell
64
cell line
10
in vitro differentiated cells
Organ
936
epithelium
624
kidney
466
brain
457
connective tissue
374
musculature of body
311
lung
289
intestine
269
pancreas
268
vasculature
249
heart
244
limb
215
bodily fluid
207
embryo
205
blood
204
skin of body
203
blood vessel
174
large intestine
148
liver
146
extraembryonic component
119
stomach
109
eye
89
bone element
87
mammary gland
84
small intestine
83
adipose tissue
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphatic vessel
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
443
AMP
25
ENCODE
20
T1D
2
community
Genome assembly (visualization)
368
hg19
139
GRCh38
month_released!
August, 2021
BIOSAMPLE
TYPE
490 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
candidate regulatory elements
gene expression
chromatin state
differential activity
binding sites
histone modifications
variant allelic effects
eQTL
Fine-mapped variants
variant to gene
caQTL
sQTL
tissue
placenta
1
15
26
14
1
2
1
liver
4
10
13
1
9
1
1
2
1
1
islet of Langerhans
6
1
11
3
2
1
1
6
2
2
1
body of pancreas
5
8
2
4
1
1
3
pancreas
5
5
5
3
1
1
1
1
+ See 9 more…
primary cell
hepatocyte
8
3
2
13
1
1
1
2
pancreatic ductal cell
6
3
3
3
1
2
1
pancreatic beta cell
8
3
3
3
1
pancreatic alpha cell
7
3
3
3
1
endothelial cell of hepatic sinusoid
6
4
6
+ See 20 more…
cell line
EndoC_BH1
8
1
8
3
1
HepG2
2
3
2
2
2
5
HuH-7
1
1
1
1
1
1
Panc1
2
2
1
8988T
1
1
1
+ See 6 more…
in vitro differentiated cells
hepatocyte
1
2
1
hepatocyte(AFP)
3
pancreatic ductal cell
3
See all biosamples
Download