Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1385total RNA-seq
  • 260single cell RNA-seq
  • 86RNA microarray
  • 18small RNA-seq
  • 10MeRIP-seq
  • 7ChIP-seq
  • 3snDrop-seq
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snATAC-seq
Assay category
  • 1667Transcription
  • 7DNA binding
  • 1DNA accessibility
Target of assay
  • 6control
  • 6histone
  • 6histone modification
  • 5nucleotide modification
  • 4broad histone mark
  • 2narrow histone mark
Date released
  • 649February, 2021
  • August, 2021
  • 182May, 2021
  • 168July, 2018
  • 145May, 2020
  • 96August, 2017
  • 95February, 2023
  • 60May, 2022
  • 56September, 2020
  • 49April, 2018
  • 49July, 2019
  • 47September, 2023
  • 27September, 2018
  • 26October, 2019
  • 25February, 2020
  • 20November, 2019
  • 15February, 2018
  • 15March, 2020
  • 14November, 2020
  • 10April, 2020
  • 10December, 2019
  • 4March, 2023
  • 4May, 2023
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1November, 2018
  • 1October, 2022
Available data
  • 1355tsv
  • 1327bam
  • 1322bigWig
  • 373fastq
  • 100txt
  • 52zippedFastqFolder
  • 8csv
  • 7tagAlign
  • 6bed broadPeak
  • 6bed narrowPeak
  • 6bigBed narrowPeak
  • 2bed bed3+
Organism
  • 1762Homo sapiens
Biosample type
  • 1168tissue
  • 374primary cell
  • 131in vitro differentiated cells
  • 101cell line
  • 2stem cell
Organ
  • 496pancreas
  • 475connective tissue
  • 400adipose tissue
  • 204epithelium
  • 179liver
  • 146bone element
  • 70heart
  • 69kidney
  • 59blood vessel
  • 59vasculature
  • 54artery
  • 21brain
  • 19eye
  • 10lung
  • 8musculature of body
  • 6embryo
  • 4skeleton
  • 3limb
  • 1nerve
  • 1spinal cord
Project
  • 1478AMP
  • 177HPAP
  • 60T1D
  • 47KPMP
  • 10LungMap
  • 4community
Genome assembly (visualization)
  • 1323hg19
  • 1321GRCh38
Lab
  • 1435AMP-T2D consortium
  • 177Klaus Kaestner, Upenn
  • 70Kyle Gaulton, UCSD
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 10Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
  • 3Katalin Susztak, Upenn
Audit category:
  • 225inconsistent ontology term
  • 9audit script error
Audit category:
  • 1inconsistent assembly
month_released!
  • August, 2021
replicates.library.nucleic_acid_term_name!
  • DNA
BIOSAMPLE
ASSAY

1776 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
RNA microarray
small RNA-seq
MeRIP-seq
ChIP-seq
snDrop-seq
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
MPRA
shRNA RNA-seq
siRNA RNA-seq
snATAC-seq
tissue
adipose tissue382
islet of Langerhans29164
liver16711
bone element84
bone tissue58
primary cell
Langerhans cell85
pancreatic alpha cell5212
monocyte52
exocrine cell39
pancreatic beta cell2112
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell7
adipocyte5
cell line
smooth muscle cell of the coronary artery52
EndoC_BH13361
EndoC-BH111
early embryonic cell2
MIN61
stem cell
SB Ad3.111
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego