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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1821ChIP-seq
  • 455ATAC-seq
  • 212DNase-seq
  • 77snATAC-seq
  • 75WGBS
  • 68total RNA-seq
  • 57pCHi-C
  • 31Hi-C
  • 21RRBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3single cell RNA-seq
  • 2HiChIP
  • 1DNAme array
Assay category
  • 1821DNA binding
  • 749DNA accessibility
  • 97DNA methylation
  • 71Transcription
  • 313D chromatin structure
Target of assay
  • 991histone modification
  • 990histone
  • 503transcription factor
  • 501narrow histone mark
  • 488broad histone mark
  • 325control
  • 113RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 315August, 2017
  • 288October, 2019
  • 218June, 2019
  • 217May, 2021
  • 196May, 2020
  • 140May, 2022
  • August, 2021
  • 120May, 2019
  • 110February, 2023
  • 94December, 2017
  • 87November, 2018
  • 80April, 2019
  • 74October, 2018
  • 66February, 2021
  • 59July, 2019
  • 49March, 2020
  • 46September, 2018
  • 41November, 2019
  • 40May, 2024
  • 35December, 2018
  • 30January, 2019
  • 24February, 2018
  • 23October, 2017
  • 16January, 2021
  • 11May, 2023
  • 11September, 2017
  • 9April, 2020
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 3October, 2022
  • 3September, 2020
  • 2November, 2020
  • 1August, 2018
  • 1August, 2022
  • 1March, 2023
Available data
  • 2016bam
  • 1800bigWig
  • 1705bed narrowPeak
  • 1036bigBed narrowPeak
  • 985fastq
  • 367tagAlign
  • 316bed broadPeak
  • 285bigBed broadPeak
  • 266bed bed3+
  • 122tsv
  • 101zippedFastqFolder
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 2836Homo sapiens
Biosample type
  • 1380tissue
  • 710primary cell
  • 517cell line
  • 221in vitro differentiated cells
  • 8stem cell
Organ
  • 577liver
  • 446pancreas
  • 314epithelium
  • 265brain
  • 231heart
  • 204connective tissue
  • 171vasculature
  • 165blood vessel
  • 155kidney
  • 119limb
  • 90adipose tissue
  • 88musculature of body
  • 85artery
  • 69blood
  • 69bodily fluid
  • 42eye
  • 42nerve
  • 25spleen
  • 23embryo
  • 22vein
  • 18ureter
  • 13bone element
  • 12skeleton
  • 10lung
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 2495AMP
  • 184T1D
  • 147HPAP
  • 9LungMap
  • 1ITG
Genome assembly (visualization)
  • 1830hg19
  • 1701GRCh38
  • 5hg18
Lab
  • 2326AMP-T2D consortium
  • 273Kyle Gaulton, UCSD
  • 147Klaus Kaestner, Upenn
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 11Katalin Susztak, Upenn
  • 9Xin Sun, UCSD
  • 3Struan F.A. Grant, CHOP
  • 2Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 125inconsistent ontology term
  • 33audit script error
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • August, 2021
BIOSAMPLE
ASSAY

2836 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
snATAC-seq
WGBS
total RNA-seq
pCHi-C
Hi-C
RRBS
FAIRE-seq
GRO-seq
CRISPR genome editing followed by DNA sequencing
single cell RNA-seq
HiChIP
DNAme array
tissue
liver1452023111
islet of Langerhans7168174211
kidney27111311
heart left ventricle35234111
body of pancreas35442
primary cell
monocyte8515211
pancreatic alpha cell1335311
pancreatic beta cell1323161
Langerhans cell48
CD8-positive, alpha-beta T cell33221
cell line
HepG236011521
GM12878601
EndoC_BH11519132
Panc11311
smooth muscle cell of the coronary artery68
in vitro differentiated cells
adipocyte6771
embryonic stem cell4061
pancreatic endoderm181
hepatocyte15
definitive endodermal cell81
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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