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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 728ChIP-seq
  • 225total RNA-seq
  • 183ATAC-seq
  • 95single cell RNA-seq
  • 49DNase-seq
  • 49pCHi-C
  • 19RRBS
  • 18Hi-C
  • 11small RNA-seq
  • 10MeRIP-seq
  • 8WGBS
  • 8snATAC-seq
  • 4FAIRE-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 728DNA binding
  • 331Transcription
  • 244DNA accessibility
  • 28DNA methylation
  • 183D chromatin structure
Target of assay
  • 418transcription factor
  • 244histone
  • 244histone modification
  • 144narrow histone mark
  • 100broad histone mark
  • 88recombinant protein
  • 82RNA binding protein
  • 69control
  • 32chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 148May, 2021
  • 144May, 2020
  • 124October, 2019
  • August, 2021
  • 64November, 2018
  • 62December, 2017
  • 62June, 2019
  • 60July, 2019
  • 56August, 2017
  • 53February, 2023
  • 48March, 2020
  • 45July, 2018
  • 43February, 2021
  • 39April, 2018
  • 28December, 2018
  • 25February, 2020
  • 24November, 2019
  • 21January, 2019
  • 14May, 2019
  • 10November, 2020
  • 8October, 2018
  • 7December, 2019
  • 7October, 2017
  • 5January, 2021
  • 5March, 2019
  • 3August, 2018
  • 3October, 2022
  • 2April, 2019
  • 2May, 2022
  • 2September, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 1110bam
  • 1043bigWig
  • 698bed narrowPeak
  • 630fastq
  • 529bigBed narrowPeak
  • 355tsv
  • 125bed broadPeak
  • 123bigBed broadPeak
  • 118tagAlign
  • 102bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 12bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1413Homo sapiens
Biosample type
  • 472primary cell
  • 449cell line
  • 347tissue
  • 141in vitro differentiated cells
  • 4stem cell
Organ
  • 418liver
  • 199pancreas
  • 165epithelium
  • 96brain
  • 64connective tissue
  • 58blood
  • 58bodily fluid
  • 52kidney
  • 49vasculature
  • 44blood vessel
  • 41heart
  • 22musculature of body
  • 19vein
  • 17adipose tissue
  • 11artery
  • 9bone element
  • 8limb
  • 8skeleton
  • 7eye
  • 5embryo
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 1242AMP
  • 161T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 1112hg19
  • 963GRCh38
Lab
  • 1211AMP-T2D consortium
  • 173Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 3Struan F.A. Grant, CHOP
  • 2Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 134inconsistent ontology term
  • 28inconsistent control
  • 6audit script error
  • 1inconsistent replicate
Audit category:
  • 26missing controlled_by
Audit category:
  • 38inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • August, 2021
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1413 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
MeRIP-seq
WGBS
snATAC-seq
FAIRE-seq
CRISPR genome editing followed by DNA sequencing
snDrop-seq
DNAme array
primary cell
monocyte4726211
naive thymus-derived CD4-positive, alpha-beta T cell21221
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein16111
skeletal muscle myoblast15121
cell line
HepG233351211
GM1287856
EndoC_BH122263
Panc11111
RCC 7860 HIF1a re-expression41
tissue
islet of Langerhans22937611143
liver4231111
brain111121
heart531411
body of pancreas71
in vitro differentiated cells
embryonic stem cell11551
cardiac precursors (cardiac muscle cell)1911
adipocyte7171
hepatocyte15
cardiomyocytes12
stem cell
hESC3
mesenchymal stem cell1
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