Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 182total RNA-seq
  • 156ChIP-seq
  • 93ATAC-seq
  • 89single cell RNA-seq
  • 28pCHi-C
  • 27DNase-seq
  • 11small RNA-seq
  • 8Hi-C
  • 5snATAC-seq
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 282Transcription
  • 156DNA binding
  • 128DNA accessibility
  • 83D chromatin structure
  • 1DNA methylation
Target of assay
  • 116histone
  • 116histone modification
  • 81narrow histone mark
  • 35broad histone mark
  • 33transcription factor
  • 9RNA binding protein
  • 9control
  • 2nucleotide modification
Date released
  • 134May, 2021
  • 88May, 2020
  • 50October, 2019
  • August, 2021
  • 47February, 2023
  • 44July, 2018
  • 39April, 2018
  • 36July, 2019
  • 33August, 2017
  • 32March, 2020
  • 30June, 2019
  • 25February, 2020
  • 11February, 2021
  • 7October, 2017
  • 5March, 2019
  • 4November, 2020
  • 3August, 2018
  • 3December, 2017
  • 3October, 2022
  • 2January, 2021
  • 2May, 2022
  • 2November, 2018
  • 2September, 2017
  • 1April, 2019
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1November, 2019
  • 1October, 2018
  • 1September, 2018
Available data
  • 442bam
  • 442bigWig
  • 294tsv
  • 145bed narrowPeak
  • 129fastq
  • 92tagAlign
  • 63bed bed3+
  • 40bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 6bed bed3
  • 6bedpe bed3+
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 609Homo sapiens
Biosample type
  • 298primary cell
  • 240tissue
  • 70in vitro differentiated cells
  • 1stem cell
Organ
  • 136pancreas
  • 77epithelium
  • 71brain
  • 53connective tissue
  • 25heart
  • 19kidney
  • 17adipose tissue
  • 12liver
  • 9musculature of body
  • 8bone element
  • 8skeleton
  • 7blood vessel
  • 7vasculature
  • 4artery
  • 3eye
  • 3limb
  • 2blood
  • 2bodily fluid
  • 2embryo
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 467AMP
  • 138T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 458hg19
  • 394GRCh38
Lab
  • 441AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 3Klaus Kaestner, Upenn
  • 2Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 51inconsistent ontology term
  • 4audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 4inconsistent control read length
month_released!
  • August, 2021
BIOSAMPLE
ASSAY

609 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
small RNA-seq
Hi-C
snATAC-seq
MeRIP-seq
FAIRE-seq
snDrop-seq
DNAme array
primary cell
monocyte264721
pancreatic alpha cell111
pancreatic beta cell111
pancreatic delta cell10
pancreatic acinar cell81
tissue
islet of Langerhans9221861124
liver26111
brain612
heart21411
frontal cortex2211
in vitro differentiated cells
embryonic stem cell51141
cardiomyocytes12
adipocyte173
induced pluripotent stem cell9
cardiomyocytes (cardiac muscle cell)11
stem cell
mesenchymal stem cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego