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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
DNase-seq
39
ChIP-seq
7
total RNA-seq
6
Hi-C
6
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
53
DNA accessibility
39
DNA binding
10
Transcription
7
DNA methylation
6
3D chromatin structure
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
61
June, 2019
26
August, 2017
12
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
87
bigWig
78
bed narrowPeak
76
bam
65
bigBed narrowPeak
64
bed broadPeak
52
bed bed3+
51
bigBed broadPeak
15
tagAlign
10
tsv
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
116
Homo sapiens
Biosample type
101
tissue
15
primary cell
Organ
945
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
116
AMP
Genome assembly (visualization)
93
hg19
72
GRCh38
Lab
116
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
month_released!
August, 2022
organ_slims!
eye
BIOSAMPLE
ASSAY
116 results
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DNase-seq
ChIP-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
13
7
1
muscle of arm
17
renal pelvis
10
gastrocnemius medialis
1
4
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
1
2
1
pericardium fibroblast
1
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