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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
8
snATAC-seq
2
ATAC-seq
2
WGBS
1
DNase-seq
1
pCHi-C
Assay category
46
DNA binding
11
DNA accessibility
2
DNA methylation
Target of assay
29
transcription factor
10
control
8
RNA binding protein
8
chromatin remodeller
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
December, 2018
25
January, 2019
24
November, 2018
8
January, 2021
1
January, 2018
1
March, 2020
1
October, 2017
Available data
50
bam
50
fastq
41
bigWig
38
bed narrowPeak
37
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
60
Homo sapiens
Biosample type
34
cell line
18
tissue
8
primary cell
Organ
946
pancreas
727
liver
684
connective tissue
505
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
43
nerve
42
blood
42
bodily fluid
24
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
52
AMP
8
T1D
Genome assembly (visualization)
40
GRCh38
39
hg19
Lab
52
AMP-T2D consortium
8
Kyle Gaulton, UCSD
month_released!
December, 2017
December, 2018
organ_slims!
skin of body
BIOSAMPLE
ASSAY
60 results
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ChIP-seq
snATAC-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
cell line
GM12878
33
1
tissue
spleen
13
1
2
1
1
primary cell
peripheral blood mononuclear cell
8
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