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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
32
DNase-seq
18
snATAC-seq
9
single cell RNA-seq
7
ATAC-seq
4
Hi-C
3
total RNA-seq
1
WGBS
1
pCHi-C
Assay category
67
DNA binding
57
DNA accessibility
12
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
7
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
October, 2019
32
June, 2019
27
December, 2018
19
April, 2020
18
January, 2019
15
November, 2018
8
January, 2021
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
January, 2018
1
March, 2020
Available data
106
bam
98
bed narrowPeak
94
bigWig
92
bigBed narrowPeak
60
fastq
32
bed bed3+
32
bed broadPeak
32
bigBed broadPeak
4
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
141
Homo sapiens
Biosample type
73
tissue
61
cell line
8
primary cell
Organ
928
pancreas
721
liver
680
connective tissue
490
adipose tissue
470
epithelium
385
heart
324
kidney
200
brain
189
vasculature
183
blood vessel
159
bone element
115
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
25
spleen
24
embryo
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
115
AMP
19
LungMap
8
T1D
Genome assembly (visualization)
99
hg19
98
GRCh38
Lab
115
AMP-T2D consortium
19
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
month_released!
December, 2017
October, 2019
BIOSAMPLE
ASSAY
142 results
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ChIP-seq
DNase-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
Hi-C
total RNA-seq
WGBS
pCHi-C
tissue
muscle of leg
7
13
1
lung
10
9
1
muscle of arm
17
gastrocnemius medialis
4
1
distal epiphysis of femur
1
+ See 9 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
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