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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
312
ChIP-seq
Assay category
312
DNA binding
Target of assay
312
transcription factor
162
histone modification
161
histone
121
control
93
narrow histone mark
82
recombinant protein
broad histone mark
60
RNA binding protein
20
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
243
November, 2017
49
November, 2018
December, 2017
11
August, 2021
4
August, 2017
2
June, 2019
1
May, 2019
1
May, 2021
1
November, 2019
Available data
307
bigWig
303
bed narrowPeak
300
bam
296
fastq
286
bigBed narrowPeak
46
bed broadPeak
46
bigBed broadPeak
3
tar
2
bed bed3+
1
tagAlign
Organism
312
Homo sapiens
Biosample type
298
cell line
8
tissue
5
primary cell
1
in vitro differentiated cells
Organ
305
liver
51
blood
51
bodily fluid
40
connective tissue
19
pancreas
17
adipose tissue
17
heart
10
kidney
9
vasculature
8
blood vessel
7
epithelium
6
spleen
5
artery
3
brain
1
eye
Project
312
AMP
Genome assembly (visualization)
303
hg19
260
GRCh38
Lab
301
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
month_released!
December, 2017
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
312 results
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ChIP-seq
cell line
HepG2
297
EndoC_BH1
1
tissue
liver
8
primary cell
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
kidney epithelial cell
1
retinal pigment epithelial cell
1
in vitro differentiated cells
pancreatic PP cell
1
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