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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
4
DNase-seq
4
pCHi-C
1
ChIP-seq
1
RRBS
Assay category
32
DNA accessibility
19
Transcription
1
DNA binding
1
DNA methylation
Target of assay
3
histone
histone modification
3
narrow histone mark
1
RNA binding protein
control
1
transcription factor
Date released
31
February, 2023
19
October, 2019
5
June, 2019
1
February, 2020
1
July, 2019
Available data
32
bed narrowPeak
5
bam
5
bigBed narrowPeak
5
bigWig
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
57
Homo sapiens
Biosample type
54
tissue
3
primary cell
Organ
742
pancreas
571
connective tissue
547
liver
435
adipose tissue
399
epithelium
312
kidney
276
heart
159
bone element
143
vasculature
139
blood vessel
112
artery
68
brain
62
blood
62
bodily fluid
57
eye
57
musculature of body
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
11
spleen
8
nerve
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
57
AMP
Genome assembly (visualization)
33
hg19
5
GRCh38
Lab
57
AMP-T2D consortium
month_released!
December, 2017
organ_slims!
ovary
target.investigated_as!
control
histone modification
BIOSAMPLE
ASSAY
57 results
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ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
ChIP-seq
RRBS
tissue
retina
15
3
3
islet of Langerhans
1
14
4
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
1
1
1
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