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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
7
ChIP-seq
4
Hi-C
3
total RNA-seq
1
WGBS
Assay category
32
DNA accessibility
7
DNA binding
4
3D chromatin structure
3
Transcription
1
DNA methylation
Target of assay
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
1
control
Date released
October, 2019
32
June, 2019
7
May, 2019
5
July, 2019
3
February, 2020
Available data
40
bam
39
bigWig
38
bed narrowPeak
38
bigBed narrowPeak
32
bed bed3+
32
bed broadPeak
32
bigBed broadPeak
3
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
47
Homo sapiens
Biosample type
47
tissue
Organ
928
pancreas
783
liver
680
connective tissue
adipose tissue
489
epithelium
385
heart
324
kidney
200
brain
189
vasculature
183
blood vessel
159
bone element
115
artery
96
musculature of body
53
limb
42
blood
42
bodily fluid
40
eye
37
embryo
20
lung
18
spleen
18
ureter
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
47
AMP
Genome assembly (visualization)
38
GRCh38
38
hg19
Lab
47
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
December, 2018
October, 2019
organ_slims!
adipose tissue
skeleton
BIOSAMPLE
ASSAY
47 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
WGBS
tissue
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
1
forelimb muscle
1
hindlimb muscle
1
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