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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
45
ATAC-seq
44
ChIP-seq
8
snATAC-seq
2
DNase-seq
2
single cell RNA-seq
Assay category
57
Transcription
55
DNA accessibility
44
DNA binding
Target of assay
31
transcription factor
10
control
9
RNA binding protein
8
chromatin remodeller
3
histone
3
histone modification
3
narrow histone mark
Date released
66
February, 2021
35
February, 2023
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
5
May, 2019
3
July, 2019
2
August, 2021
2
June, 2019
1
February, 2020
1
January, 2018
Available data
109
bam
92
bigWig
80
bed narrowPeak
57
tsv
33
fastq
32
bigBed narrowPeak
6
tagAlign
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
156
Homo sapiens
Biosample type
100
cell line
46
tissue
10
primary cell
Organ
943
pancreas
790
liver
684
connective tissue
521
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
limb
96
musculature of body
61
eye
43
nerve
42
blood
42
bodily fluid
37
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
148
AMP
8
T1D
Genome assembly (visualization)
134
GRCh38
100
hg19
Lab
148
AMP-T2D consortium
8
Kyle Gaulton, UCSD
month_released!
December, 2018
October, 2022
organ_slims!
limb
BIOSAMPLE
ASSAY
156 results
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total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
GM12878
1
33
tissue
coronary artery
1
36
5
2
pulmonary artery
2
primary cell
peripheral blood mononuclear cell
8
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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