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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
29
ATAC-seq
19
total RNA-seq
8
snATAC-seq
4
DNase-seq
4
pCHi-C
1
RRBS
Assay category
41
DNA accessibility
38
DNA binding
19
Transcription
1
DNA methylation
Target of assay
27
transcription factor
9
RNA binding protein
8
chromatin remodeller
7
control
4
histone
4
histone modification
4
narrow histone mark
Date released
31
February, 2023
December, 2018
21
October, 2019
18
January, 2019
15
November, 2018
8
January, 2021
7
June, 2019
1
February, 2020
1
January, 2018
1
July, 2019
Available data
60
bed narrowPeak
40
bam
34
bigWig
33
bigBed narrowPeak
33
fastq
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
103
Homo sapiens
Biosample type
56
tissue
34
cell line
13
primary cell
Organ
946
pancreas
790
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
43
nerve
42
blood
42
bodily fluid
37
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
spinal cord
1
stomach
1
urinary bladder
Project
95
AMP
8
T1D
Genome assembly (visualization)
62
hg19
33
GRCh38
Lab
95
AMP-T2D consortium
8
Kyle Gaulton, UCSD
month_released!
December, 2018
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
103 results
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ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
tissue
islet of Langerhans
2
1
14
4
retina
15
3
3
pigmented layer of retina
12
2
cell line
GM12878
33
1
primary cell
peripheral blood mononuclear cell
8
retinal pigment epithelial cell
3
1
1
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