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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
41
DNase-seq
37
ATAC-seq
26
total RNA-seq
5
pCHi-C
4
Hi-C
3
WGBS
1
RRBS
Assay category
84
DNA binding
78
DNA accessibility
26
Transcription
4
3D chromatin structure
4
DNA methylation
Target of assay
58
histone
58
histone modification
38
broad histone mark
22
control
20
narrow histone mark
4
transcription factor
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
90
October, 2019
39
June, 2019
31
February, 2023
9
November, 2018
December, 2018
7
January, 2019
7
May, 2019
6
February, 2021
6
July, 2019
4
February, 2020
1
March, 2020
1
October, 2017
Available data
138
bam
136
bed narrowPeak
110
bigWig
100
bigBed narrowPeak
41
bed bed3+
41
bed broadPeak
41
bigBed broadPeak
17
fastq
13
tsv
4
bed bedMethyl
4
bigBed bedMethyl
Organism
201
Homo sapiens
Biosample type
196
tissue
5
primary cell
Organ
946
pancreas
790
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
43
nerve
42
blood
42
bodily fluid
37
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
201
AMP
Genome assembly (visualization)
141
hg19
115
GRCh38
Lab
201
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
December, 2018
organ_slims!
thymus
BIOSAMPLE
ASSAY
201 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
pCHi-C
Hi-C
WGBS
RRBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
islet of Langerhans
3
1
14
4
muscle of leg
7
13
1
retina
3
15
3
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primary cell
retinal pigment epithelial cell
3
1
1
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