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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
190
DNA binding
36
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
162
histone
162
histone modification
107
narrow histone mark
55
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
30
June, 2019
May, 2019
18
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
February, 2023
Available data
215
bam
197
bigWig
178
bed narrowPeak
118
tagAlign
102
bigBed narrowPeak
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
257
Homo sapiens
Biosample type
236
tissue
21
primary cell
Organ
888
pancreas
786
liver
670
connective tissue
490
adipose tissue
461
epithelium
346
kidney
336
heart
257
brain
151
bone element
151
vasculature
145
blood vessel
115
limb
101
artery
89
musculature of body
69
blood
69
bodily fluid
43
nerve
37
embryo
30
eye
25
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
257
AMP
Genome assembly (visualization)
192
GRCh38
138
hg19
Lab
257
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
December, 2019
February, 2023
May, 2019
BIOSAMPLE
ASSAY
257 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
cingulate gyrus
14
+ See 77 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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