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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
60
total RNA-seq
51
ATAC-seq
38
DNase-seq
2
single cell RNA-seq
Assay category
89
DNA accessibility
77
DNA binding
62
Transcription
Target of assay
51
histone
51
histone modification
34
broad histone mark
21
control
17
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
72
February, 2021
69
October, 2019
35
February, 2023
34
June, 2019
12
May, 2019
July, 2019
4
February, 2020
2
August, 2021
Available data
186
bam
151
bigWig
144
bed narrowPeak
89
bigBed narrowPeak
62
tsv
38
bed bed3+
38
bed broadPeak
38
bigBed broadPeak
6
tagAlign
Organism
228
Homo sapiens
Biosample type
162
tissue
66
cell line
Organ
940
pancreas
776
liver
666
connective tissue
505
epithelium
479
adipose tissue
368
heart
340
kidney
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
228
AMP
Genome assembly (visualization)
199
GRCh38
165
hg19
Lab
228
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
December, 2019
July, 2019
organ_slims!
intestine
BIOSAMPLE
ASSAY
228 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
5
1
35
2
tibial nerve
35
5
1
2
tibial artery
23
1
1
2
muscle of leg
7
13
muscle of arm
17
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cell line
smooth muscle cell of the coronary artery
6
52
8
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