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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
44
ATAC-seq
20
DNase-seq
11
ChIP-seq
2
single cell RNA-seq
Assay category
64
DNA accessibility
58
Transcription
11
DNA binding
Target of assay
5
transcription factor
4
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
October, 2019
20
June, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
Available data
94
bam
82
bigWig
71
bed narrowPeak
58
tsv
23
bigBed narrowPeak
20
bed bed3+
20
bed broadPeak
20
bigBed broadPeak
6
tagAlign
Organism
133
Homo sapiens
Biosample type
66
cell line
65
tissue
2
primary cell
Organ
824
pancreas
739
liver
680
connective tissue
490
adipose tissue
403
epithelium
385
heart
321
kidney
200
brain
189
vasculature
183
blood vessel
159
bone element
115
artery
94
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
133
AMP
Genome assembly (visualization)
125
GRCh38
90
hg19
Lab
133
AMP-T2D consortium
month_released!
December, 2019
May, 2022
October, 2019
BIOSAMPLE
ASSAY
133 results
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total RNA-seq
ATAC-seq
DNase-seq
ChIP-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
2
5
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
pulmonary artery
2
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primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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